PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000305771
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 1598aa    MW: 178558 Da    PI: 8.6854
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000305771genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029383404323
                    ETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                    Cp+C+k F+++  L+ H  + H
  MDP0000305771 383 CPKCSKGFRDPVALVEHVERdH 404
                    *****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.101.7E-9208265IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.28E-7210261No hitNo description
PROSITE profilePS510398.022215263IPR000058Zinc finger, AN1-type
PfamPF014285.3E-7218258IPR000058Zinc finger, AN1-type
SMARTSM003550.042342365IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12342370IPR007087Zinc finger, C2H2
PROSITE patternPS000280344365IPR007087Zinc finger, C2H2
SMARTSM003557.1381404IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411381409IPR007087Zinc finger, C2H2
PROSITE patternPS000280383404IPR007087Zinc finger, C2H2
PfamPF036044.1E-1013871415IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
SMARTSM006591.2E-413871425IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
SuperFamilySSF633931.96E-713871418IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4
Gene3DG3DSA:2.20.28.302.3E-1113871418IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
ProDomPD0121513.0E-413881418No hitNo description
Gene3DG3DSA:2.20.28.301.7E-1814881527IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
SuperFamilySSF633937.32E-1314891526IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4
SMARTSM006598.7E-1614891536IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
PfamPF036041.7E-1514911522IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
ProDomPD0121510.00214951517No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1598 aa     Download sequence    Send to blast
MIEVKKERPL GVLPRIPDAE VGYTFKKLRP EVFKENNTFT PPYNCPKSVI LRWLQRLCLF  60
FSLGEKRKLG RPWPWDSRVF GVSLCIRGSQ NPIQASDNPI PIPIPASPNK SRDQIIRSIL  120
YISTHFVDWR RASTAQRAKF GWELRNSQIW VFCLEHRSYI KHNCPNGDRN NVTVVICPLC  180
AKGVHLIPDE DPNITWERHV NTDCDPSNYE KATKKKKCPI PGCKEILTFS NTIKCRDCMV  240
DXCLKHRFGP DHKCPGPKKP EAGFPFMGYL SRSRKEVSKP SHAPAASSPK WGSFLTAASS  300
FRASAEASVA KLSSELSQKW QIAKDGTGPS SSSSGSRNGQ VEVCPQCGAK FSSVTTLVDH  360
VEKVHEKSGN RAAGVKKVTI DACPKCSKGF RDPVALVEHV ERDHGGKERP ISEVPIFPSC  420
QIVCILYSKM SAVSGVISRQ VLPACGSLCF FCPALRARSR QPVKRYKKLI ADIFPRNQEE  480
GPNDRKIGKL CEYVAKNPLR IPKTDGTYTF NLEGFIPKLC QIAQEPGEDE RASNLRSAAL  540
QALSSMVWFM GEKSHISVKF DSIVAVVLEN YGGSNKTTEN LEGSKRWVQE VQSNEGHGSS  600
SPDVTIRLTS WSTLVDDKGE LNVTVEDAKN PCFWSRVCLH NMAKLAKEAT TIRRVLESLF  660
RYFDTGNLWS PKYGLAIPVL KDIQVLMDDC GQSTHILLSI LIKHLDHKNV LKQPNMQLEI  720
AEVTTSLSQL AKVEPSVAII GAVSDAMRHL RKSIHCSLDD ANLGTDVTKW NRSFREVVDK  780
CLVQLCYKVG EPGPILDAMA VMLENISTIT VIARNTISAV YRTAQIVASL PNLSYQNKAS  840
SITYVLAFPE ALFHQLLPAM VHPDHETRVG AHRIFSVVLV PSSVCPTRSS PNTESKKALN  900
FPRTLSRTVS VFSSSAALFE KLRREKISSR ESICEEDNEN TDNEGEQRDT NNGILSRLRS  960
SYSRTYSIKS SPAPSSTKEN SVNSSTKEPE ANSLRLSSHQ ITLLLLSIWA QSISPGNMPE  1020
NYEAIAHTLS LVVLFSRAKN SRIEVLVRSF QLAFSLRNIS LNEGGLLPPS RRRSLFTLAT  1080
SMILFLSKAY NIVSLVCRAK AVLVDKIVDP FLHLVEDRKL QAVKTGPNHP RHLYGSEEDD  1140
NMALKSLSEI NITEEQTKEF FASEVVKSLE RLLDAEMSTI REELLSEFLP DDVCPLGAQL  1200
CMDAPQKLYQ VDSRDTKSMK EDAPIFSLDD DYFQGSFDSQ KNNLDFSAES HNLLSVSQLI  1260
ESVLETAHQV GRVSVSNAPD VPYKEMAGQC EALLLGKQQK MSNLMSSQPK QEYLMNQSLQ  1320
NHSDDAKWMT SDSHRSGNPF VDDTANSYKP SPSTGHAPMM CVTEYQHHPH SFRLPASSPY  1380
DNFLKAAECG LEVQLKPNDS MQCRDCGYHI LYKKRARRNA NSRCEAPYTM LHPRRLGSCE  1440
VGDGKLKRRT FGILCELLRT RGRLRMYGSV SIEDPIRAAP MDPPPPEAVY YICGDCGMEV  1500
QLKSNDVIQC RECGYRILYK KRTRRSKSSL XLYDXIQRLI MTNGCFCSCS VRGALKNPGG  1560
ALSMATDDVN DRWRLLNSAM FYTTCTVLTR NSPIGQGV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.36680.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355501.10.0PREDICTED: uncharacterized protein LOC103946512
RefseqXP_009355500.10.0PREDICTED: uncharacterized protein LOC103946512
TrEMBLM5WCD00.0M5WCD0_PRUPE; Uncharacterized protein
STRINGPOPTR_0016s05540.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.12e-96C2H2 family protein